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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39946066, gi|...
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPPPKRTD VTYRLRNTPT KTAPESSARG ILGGEGWTIQ LAQYCDHSCW DALGATSFCF  60
   61 CGDIGGRQPY GKGLVYKMAA SLLLLLLCFG RYPWHVGNYQ INAYLRVLKS RNMVQYVFTP 120
  121 WKDRGELLQV RRQFFPQQVA QHAPTVASGN GAVAAAGTAA SSSFSSSSIV SSSSSSRADK 180
  181 KSAVSRVSMW MQRGGCPHMV ESTALLIAAM IADEESMLLP TGKSATDSNS SYAVRASYSA 240
  241 AFSRFVTGLL DSHQDKAHKM SMYSVAKTIG LPATFVELRH QATHEQLPSL TRLRAGAQAG 300
  301 LVWIWDYYWK QLSAAEEDED QVPVVAGRSA AAPHVEEVPQ VVASACRDAL RRYLDVGKED 360
  361 LPTIARFVRR WGSSRVLSVL DAIGDEAGSA QPMDNRLVLG TLKLARQVTE MEQARDNDGS 420
  421 VDFVGDGGAP RSDLGQVPIE VQGVTSDAMV TESQDSKQAG GGWTRLRGSW RQKPIGFSFT 480
  481 PRRTMQVKSI PMFVADFLNR TGYIGVGSSD NYAYLVIDDK TKDAVIIDPA NPEEAAPPIK 540
  541 KAIESGEINL KAIVNTHHHW DHSGGNKKFR DALELPDLPI IGGKNCEAVT TTPANGEGFP 600
  601 FGSIQVKGLY TPCHTQDSIC WFMQDGDDKV VFTGDTLFHG GCGRFFEGTP EEMNTALNKT 660
  661 LAALPDDTRV FPGHEYTKSN VKFGISVLQS EPVQKLQEFA ESNKETQGQF TIGDEKKHNV 720
  721 FMRMDDPVIQ KATGETDPVK VMGKLREMKN NFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle