YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145019318, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSIGASFL AFALAHAFSD SSPFVFLSTV QITRPSTASN AQLQSSSQVL STAKLMLESC  60
   61 PTEQYLLISQ PNAHASDLRC AADHPGCRKA PNLVRHASSD SPLSVAEVFG SLSFSDFADH 120
  121 IKASCMQVGK TAHVVEHTLK ELPTSNEPAE RAAALEENDQ ELGNILDTAH DEGDYTAIYF 180
  181 SNPNDFKPYE SGFDDSIHME LKRQLVDTPL VKPRVAGKFS DNSTGHHDGL FHRYQFFTPG 240
  241 IFMGLLAMFL MMAILYVGLQ ALGSLQVPYG AFEKEMGPAA QRKNQ

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	239	0.99
Transmembrane Helix	240	259	0.93
Cytoplasmic	260	285	0.90