YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38111495, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.87
Transmembrane Helix	32	54	0.85
Cytoplasmic	55	79	0.86
Transmembrane Helix	80	100	0.94
Non-Cytoplasmic	101	105	0.74
Transmembrane Helix	106	127	0.92
Cytoplasmic	128	132	0.90
Transmembrane Helix	133	153	0.90
Non-Cytoplasmic	154	172	0.82
Transmembrane Helix	173	193	0.94
Cytoplasmic	194	201	0.87
Transmembrane Helix	202	224	0.89
Non-Cytoplasmic	225	238	0.78
Transmembrane Helix	239	259	0.93
Cytoplasmic	260	273	0.72
Transmembrane Helix	274	291	0.75
Non-Cytoplasmic	292	298	0.56
Transmembrane Helix	299	320	0.87
Cytoplasmic	321	757	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATTEAMAT AHELYARSGG IGGGDAASRP PIFKLVGIIL AISSGAFIGT SFVLKKYGLL  60
   61 KANEKYNEEP GEGYGYLKNF WWWTGMILMI IGEICNFVAY AFTDAILVTP LGALSVVITA 120
  121 ILSAIFLKER LSLVGKVSCF LCIVGSVVIV MNGPQESSVA TIEQMQSFVI HPAFLSYTGV 180
  181 IVIGSAITAF YCGPRWGKKN MLVYISICSW IGGLSVVATQ GLGAAIVTQI GGKPQFNQWF 240
  241 TYVLLAFVIA TLLTEIIFLN KALNLFNAAM VTPTYYVYFT STTIITSTVL FRGFKGTPTS 300
  301 IITVVLGFLT ICAGVVLLQL SKSAKDVPDT AVFNGDLDQI HTIAEQEQPE TEPKADAIRG 360
  361 TAAIVRRLSS ARMRMEAEEL KRLHEEKQAE TLDPVNEDAM AQYEWDGLRR RRTTYGSRRS 420
  421 RAMTSPNPFV IPPPTPHPPL GWSHFPTQEE LDALERPSTP GAMSSIVGTI RSRARSIMVK 480
  481 DGDTPARHSA RPGLESIHSP MHPVQLTEVN LQQTGQDLEA GLYPEKKDGK YYQGSTLSVP 540
  541 GTSRSAPAGR HRGPSNASDL SSLGPPPTPP PHGGARRQFS FQKMGFGLGM RGSGASQHQA 600
  601 SPSPGGFGSD GIEEARPRTG RGYSSPITKG ASEEERVGLV TNDVKSLPTL PRYDEVSEEN 660
  661 ELLPEEGGAY SDESRRTPPR AKYGRGITES PPRARQTLEE AEEASLAEYE ASRKRFNDTR 720
  721 AASRDRSGDP GSSRDRGSPP ARQSRRPPPG GNNGAFI