YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38111460, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPPASLP LPQRLAALAQ TLQFAWFVGH FVLIAATVKY SLSWIAMKGY RSNISYRFIF  60
   61 LSAAVTYGIV VYKTLRARAK QRAPQISPLA LAADENVQYL VLALIWLFSP RYILATLPYG 120
  121 IYSFFHVATY MRANLIPVVF PPKPAAADSV DGKPVAHPIA DMIGRFVKEY YDASMSVVAS 180
  181 LEILLWGSVF LSALLFQRRS WILLPLYTAF LRARYSQSIH VQNSFAKLEA NVENLLGNQG 240
  241 TPPAARQAWQ AIKNGGRQFY LATDINRYIG GAAAPPKKTS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	42	0.84
Non-Cytoplasmic	43	53	0.85
Transmembrane Helix	54	75	0.90
Cytoplasmic	76	95	0.91
Transmembrane Helix	96	121	0.65
Non-Cytoplasmic	122	174	0.82
Transmembrane Helix	175	196	0.86
Cytoplasmic	197	280	0.87