YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23095854
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLKWLFFT IALCDAAEPW QLGFQDAATP MMQGIIDLHH DIFFFLILIL VFVLWILVRA  60
   61 LWHWNYQKNP IPQRIVHGTT IEILWTIFPS IILMFIAIPS FALLYSMDEV VVDPAITIKA 120
  121 IGHQWYWTYE YSDYNSSDEQ SLTFDSYMIP EDDLELGQLR LLEVDNRVVV PAKTHLRMIV 180
  181 TSADVLHSWA VPSLGVKCDA VPGRLNQTSI LVQREGVYYG QCSEICGTNH AFMPIVVEAV 240
  241 SLKDYGSWVS NQLILQTN

Type	Start	End	Confidence
Cytoplasmic	1	5	0.56
Transmembrane Helix	6	20	0.40
Non-Cytoplasmic	21	41	0.66
Transmembrane Helix	42	62	0.95
Cytoplasmic	63	82	0.67
Transmembrane Helix	83	104	0.88
Non-Cytoplasmic	105	258	0.77