YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38111350, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIGICGSLC AGKSTVAQYL VEHHGFKQLR ISESLKESVK VEGQDGVNGT SMREQTGVTL  60
   61 NGKLLEFPTE TDLLDFVTKR WRDRFVTLVE DANLLDILAK RPFFLLISVD APLTVRWERH 120
  121 QKRQKEDTVQ EDLAAFVQRS DEHLYDAASG HMALMSRATV RLLNTSSSVA HLFATLGKVD 180
  181 LPNEDRLRPT WDAYFMSLAS LAAQRSNCMK RRVGCVLIRE KRVVSTGYNG TPRGLLNCGE 240
  241 GGCGRCNEGL SSGVGLATCL CLHAEENALL EAGRDRIRDG SILYCDTCPC LTCSIKIAQV 300
  301 GISEVVYSQG YSMDTDTAAV LREAGVKLRQ FVPVLRTNL

Type	Start	End	Confidence
Signal Peptide	1	17	0.75
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	339	0.99