YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145019784, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEILDKIPM PTIDRPFGVH LWPIFNKAFE AVVGFPADDF HFEVGKTPMS TLKETGIFIV  60
   61 IYYIIIFGGR ELMRNREPFK LRSLFLIHNF YLTFISGALL ALFIEQLVPT IARRGLFFAV 120
  121 CDKEGGWTQP LIVLYYLNYL TKYLELLDTV FLFLKKKPLT FLHCYHHGAT AFLCYTQLIG 180
  181 STAVQWSVIT LNLMVHVVMY WYYFQSARGI KIWWKEWITR LQITQFVIDL GFIYFASYTY 240
  241 FTSTYWPWMP NAGQCAGEEF AAFAGIASIS SYLVLFISFY LATYKKERKP PTARKSLRRM 300
  301 SQAPLPDPHS LMGAEGAATP SKAANGFSTG AKTNGSSTPR SRKA

Type	Start	End	Confidence
Cytoplasmic	1	18	0.60
Transmembrane Helix	19	35	0.36
Non-Cytoplasmic	36	49	0.64
Transmembrane Helix	50	69	0.72
Cytoplasmic	70	84	0.74
Transmembrane Helix	85	108	0.85
Non-Cytoplasmic	109	182	0.71
Transmembrane Helix	183	204	0.90
Cytoplasmic	205	222	0.89
Transmembrane Helix	223	242	0.92
Non-Cytoplasmic	243	259	0.92
Transmembrane Helix	260	284	0.90
Cytoplasmic	285	344	0.99