YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RCF1_MAGO7
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTTGPPPPL PGDRPLPSSF DNDEDFYNEN GFQKIARKLK QEPLVPLGCV LTVAAFTGAY  60
   61 RAMRAGDHGR VNRMFRYRIA AQGFTILAMV AGGIYYSDDR HKEREMWKAK RDADEEEKRL 120
  121 KWIKELEARD EEDKLAKEIM DKRRQRAAAA AAKREGRAVE DKAAEGGAAA AQDAKSSSGL 180
  181 SWASAPGWFG GNKNEPDANA QTNTGDAEKP SEK

Type	Start	End	Confidence
Cytoplasmic	1	43	0.93
Transmembrane Helix	44	63	0.88
Non-Cytoplasmic	64	78	0.81
Transmembrane Helix	79	97	0.94
Cytoplasmic	98	213	0.90