YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38111064, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYGILCAQW TASLERHISG LSSSRTRQST HSFTHRTNLL PKTQIRTAFR REDPEPRRRK  60
   61 AVPVFDDPRD DPRIRDAEPL VTPEQISRFY RSPRLHTVVV VCFLAAIAFY YANIETVPVS 120
  121 GRQRFNCHSD KTVRELSEQQ FEVLMNEFRH AGVRFLPLWD ARSRMVKRVM DRLKPVSGMD 180
  181 DMEWDFFVID DPGNANAFVL PCGKVFVFSG IFRHVQTEDA LAAVLGHEIA HNLASHAAEQ 240
  241 MSASIGTNVL FWSVAILTFG LFTIPVMYGA GVLKFLFESP MSRMQETEAD QIGLLMMAEA 300
  301 CYDPRQAIPF WRSMQQYQGS HEPPEWLSTH PSHQSRIENI QKMLPLALEK REQSDCRGTQ 360
  361 GFAESFKRAM RRGEIITLYP TRYV

Type	Start	End	Confidence
Cytoplasmic	1	94	0.83
Transmembrane Helix	95	114	0.87
Non-Cytoplasmic	115	249	0.79
Transmembrane Helix	250	275	0.83
Cytoplasmic	276	384	0.72