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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39977149, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRRNSTHR CTSAGRITAQ LLLSFLAFSV APTAAIAPHD NNAHEQFVLP LPQAPLGPLK  60
   61 PEPPAPAEHK FTLRHIYHHG THKHPRLHRK QDVHQQEAGI WLSAEDGFDK HRLPVLNARS 120
  121 RPGSIERLVD RRPSVVEPMV AQARERGFVS VLSADAWTVD AVSTPDVTDK NTIVNLAYMA 180
  181 ANAYVETPDL PDWEDVGEGF NRSADFGWES DGLRGHIFAD ENNSTIVIGL KGTSLAVFDG 240
  241 EGTTTNDKEN DNLFFSCCCA QQGQWTWRQV CDCATSSYAC NVTCVSQSLR EENRYYMAAR 300
  301 ELYSNVTELY PTSNVWLTGH SLGGAVSSFL GLTYGLPAVT FQAVPEALAA GRLGLPVPPS 360
  361 GNPELPQTRE NTGAYHFGHT ADPIYMGSCN GATASCSYAG YALETKCHAG YECVYDVVAD 420
  421 KGWRVGVGTH KIRTVIKDVL LKYDEVPECK LTPKCRDCEL WKMYESNGTE STTTSSSSTT 480
  481 SKAMTRTETC KTPGWWGCLD ETTTATSTTT TTTTPCTTTT STTTTSTCKT PGWFGCKDKT 540
  541 TSTTTTTSTS SIPTATTTCE TPGKFWGCND KTTTTEDSHT LTPTPTQHPI TAPPQGPPAA 600
  601 TSTPTSEQIS PTKRKCVRRN FLGFCKEWEK VSGYLDLATR GRFGSQTFGL ANMATDLEVP 660
  661 TEAPPLHASP SVSDSSDDDD DSRGGASAAD SQVEWLATGR ARRSTAGNRM KSMIAQEAAA 720
  721 AGVGGDEGDS DLELLFAEAD DDEGFSDNAD RDDGSDAQMD SSSDDDDDAK EGDDELEGEK 780
  781 ELEKIAKEKR AAAKKRKAQQ VIPAKFRKRV RIESTPSTRA GSEPAAQSSS HHLPRRQVVP 840
  841 APPPRPKKKS ERTSWLPSAA DMPTRASERS TTRMSKEQLH QQMVEREVRR KKQLEQQEKK 900
  901 AKRLEALKKP PMTQADRLRE AELVEKRNSK SLNRWEEAEK QREEERERKL AALYNRTLEG 960
  961 PVVTFWTGIM ELSEGQMKNV GRMVAMEEKA PRRKKQPPPA APAASISTST EKDPGTAPNT1020
 1021 VVPGAATTEV DADQQMKNAP PVAAEQSEST EKPIATPALA APVFHQAVFQ PIDLPAENVP1080
 1081 VEATATPLPS SVLAPPVSMM TPPPIGAVQG PMQMPGLSIN PGVVSNVLAP PNPSQGELSL1140
 1141 VPPTLTTTAT EPVPKETETA PIQSQPTLPP PQLPPKSHSE APKTASTQEP EKDPSPPEDK1200
 1201 DPTAAKTESE SSVNGRVTRS CIVLQNFDEE AIKDKTVQTQ ILFGRKFTKL AKPGHAPHCV1260
 1261 ITNHVAKYRD PKTGLPFANM NAYKEIRRLT EGDYKWSSIL GTWAGTGELA AKGVPNRFLH1320
 1321 GGPKEESPPP AIAEVQTDRN LPAVPPHPAE SKVSAPKLYL LCGPSRQP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle