YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38110790, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPADTTPPAI IRPIPRRPFN PSLTSASPPD DVSALDSQPV RNGDSASSLR SSLLDPKPRS  60
   61 SSQFSADTPE ETDPASISRT QSILNLTQSA LFGIYSPTMT GNSKSRSNPY SDRTEPGTPW 120
  121 GTGAQTPGRP GLYHPNVEED DPERAEALLQ LRERLGAASK SQNGGMLTGP MSPTGAHFET 180
  181 ETALPAPHTM GSVDLLTLTA KAVLLFVLGA CYGMVVYRLR DEHMSASLQQ HQQRHANSFF 240
  241 PAKGSYDKIY IAFWGASGVL LGSLLPWFDQ FCDRTLGAKT NSGCSMSTEE VKDVPTLDTD 300
  301 WALVIRGVGC FAGIAFAIVS LTLALVNPFL WYLIDRSKSG FMLASAVGVI GATVIAGLDP 360
  361 DMMPTPMLYD TAGMPLPRGS DQGRAAQLAL GGLARRATLE AAIWMLSVLF CSCVCFGNIG 420
  421 RRLALNTGTP ERGRWAGVR

Type	Start	End	Confidence
Non-Cytoplasmic	1	196	0.60
Transmembrane Helix	197	217	0.79
Cytoplasmic	218	248	0.92
Transmembrane Helix	249	268	0.92
Non-Cytoplasmic	269	307	0.92
Transmembrane Helix	308	331	0.87
Cytoplasmic	332	339	0.82
Transmembrane Helix	340	358	0.96
Non-Cytoplasmic	359	400	0.94
Transmembrane Helix	401	420	0.95
Cytoplasmic	421	439	0.89