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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39976793, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIGVPGLA TWAGPLAVAQ GRKPVPADAV SDPVTTLQSP TEQLKISRAH TINATTSRSK  60
   61 RSKDPGRITS APDPKIVTAT ATANSGTAAA AKPPRAPKSP RPTSSSGSRT PVNEPKRPSQ 120
  121 LDMLAVEARL SSSSLPLPDM RSPRMQITRP TSPVSAGLKP SEPMTRRHSH HAKAIISQDD 180
  181 MDSAQKTRLL RQNYFRCQTA FLTALEDISN RLVIVPKQAR LSALRAELAL ITQDLPAEVD 240
  241 IPVICPPSMP HGSPGKSKHH RIVRVNPAES TVLNSAEKVP YLLMVEILRD DFSFDPDSAD 300
  301 NQRLLSTLLA EQGSRKRIFD LTESPRIPLA RSGNPEPVAP DSVFEPTAGD LGGSGVLGAF 360
  361 DDSSGSGEKT PSVAAPGSSS MQRLSSSATT ISTLSEPTAR SSATSTSRSS SPGPRRKPVV 420
  421 TISTRAVNAG PSTPAVEQPD FSALATHMRA ASQMLAQLEA TSGKRPKQEV AAIRAKIIAS 480
  481 MQSLEEQSFD LDDGNGPTFD LIIAKADAAN AAAEAAAAAA TNGNAEAGED GEVEAPIDPP 540
  541 ADTTNAGAAR MENDFKTGGL QRKGDRDDPS AAVFGEAWHV KKERIRRSSP YGWMKNWDLV 600
  601 SVIVKTGADL RQEAFACQLI NVCHRIWVNA GVPVWVKLMR ILVTGESSGL IETITNGVSL 660
  661 HSIKRSLTLS TIESGQNPRR RIATLKDHFV KVFGPVDSEP HKAGVDAFKR SLAAYSMISY 720
  721 ILQLKDRHNG NVLVDNEGHI IHIDFGFMLS NSPGAVGFEA SPFKFTHEYL EVLGGIGSPE 780
  781 FEDFKKLCKQ AFQALRREAD NIIDLVSMMG RESKMPCFGA GIAQTSINLR QRFQLQLSAD 840
  841 EAEQFVDDLI GKSLGSYYTR LVDFTQQGPK ALEANSGEDN ASQRESSRPP CAGFAKHFNA 900
  901 ALNPSSANFH EEDLDENDVC DLLEWLLREK KGAIARVERL GVRRISRASL LAFSPSRNFT 960
  961 GTLVEWNHGG RRDAVMKRPQ GERRRRFLPN PGERIKKRKS GDEESDGELS DGDIIDLNPF1020
 1021 YPEPTEKPGL SLDKNVDGNK PTVIAPNEGS SNNSIATFAS TLPELQRRDT AGYPLTAQTK1080
 1081 VHTSHGQQQD HALQAPSFHI DPESGMAEVV QQKVECIEAS TNAIEQPQLQ GAVCSTPAYP1140
 1141 VDNRLIQPAA APAAAPVSMK TKHPFSTFET LQNGSQQAVT HNISNDGGAF GNANGAFTMA1200
 1201 SYDAYPHNGL TGIGLEEKAY VETRPAPNPS GTAYYAASSP YALAAATRPH AQASVASFVG1260
 1261 GMDGSVDSIH LQHRNLAMPP AEDFFHTSFD DLVVWDGNV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle