YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39976741, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVELDQTP FAAVSAQTSR LSRQYQAVLD QSTPYVLYRW IGTGITLVLF FARIFVAQGW  60
   61 YIVAYALGIY LLNLFLAFLQ PKFDPSNEAL DNDMEDGAVG GLPTKQDEEF RPFIRRLPEF 120
  121 KFWHAATRAI VIGFLCSWFE VFNVPVFWPV LVMYWFILFF LTMRKQIQHM IKYRYVPFSF 180
  181 GKARYAKNSS

Type	Start	End	Confidence
Cytoplasmic	1	35	0.92
Transmembrane Helix	36	55	0.91
Non-Cytoplasmic	56	60	0.71
Transmembrane Helix	61	79	0.92
Cytoplasmic	80	119	0.93
Transmembrane Helix	120	139	0.88
Non-Cytoplasmic	140	145	0.69
Transmembrane Helix	146	164	0.92
Cytoplasmic	165	190	0.96