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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38110580, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTPQAQAD SVLSAVSSVS TCSSATVVLL KNLLVPSDAT VPTKPLTANE TRATKTTRTT  60
   61 KASTAKTPAK KTEKAEPDGL TPKERAVVAT KVVNATLKTL GDAAKPAPAA AAQLSAEPQG 120
  121 LAKKTSRAAL RRSSSAPMTP LNPRTLNRTS SSPTKPAARP TSSSSAAATA RSNGCLAVVE 180
  181 CARVAFSALR GLQAAGETKL PELQLENGLS ALASRLVAVG MLDQAAKELR HLKQRLDTLL 240
  241 GSSIAGAAAP KKKTARAAQP ETAISVARVS DILDFGGIQV KDAGAITELI ISTQLLALRV 300
  301 LSLMKKPQHT QPAVEYLKDP AKTSPLDLLL ASVECGLKTP DKAARQLETF SQLLLSLSPS 360
  361 VSSKADAEAC EPRLNISPSA AFEVHVLGLE ARTHWWSLAG HKGDVDKDII QPLWRCLGAY 420
  421 VRRKPAADES LYLGCADAVQ RVVQLAKDKG FKPTESFKSP LASLYQALGA MARESKQYQE 480
  481 AASWIKRLKA LLQPNEDSDT SRCSVAALLL SIQLKDAEQY AESESLLREV LDGIQGVLKG 540
  541 NTSDLEGLLT NVNLARRSVM NALVDEEPIP TASKGLMEEL VLQCPKFCLR WLGKPIPASG 600
  601 STKDFVSYEQ RRQTLATMLQ HMLDSAFLVI KMHMDEKRVS WAQMDSILAD CLTILEYMGD 660
  661 AAPRPGSPGN SVYVKMSLFH WIHYSTLAES SKDPKDPEPL RALRRSIECV KHRPAAEKEK 720
  721 TQFAVKLERM AELCQSMGRI SEALGALQTL RSALIEDGAL DEVVEASTSL PPALAWKCSS 780
  781 KAANLSRILT SIWKLEQIWI DWSVDLTEPE QLSVREHRLH FILMKSDRTL PTMTDKTVES 840
  841 LLTKYYPTRH PICRLRTLLC LFVVHLDSSD ELPAIESQIE AVVGLIKKSG FGEDSALSSY 900
  901 MEHYRAYYKS LSAMKSQIPD LDRIEQSIHQ WKTITEACST PADLDSRIDD ASHLVRHLQS 960
  961 IIDFSKAMGQ DSLQLSTLEL LTKISGLLED SDTDTRLASN SRLALLYAST GRSSLAQKAL1020
 1021 DAGLKFTQER EVVSRESVAN FHLAFAEFQL FTGNLNEAPM ARSQRRDLIT YASLLQSMIA1080
 1081 SKKGEAHHAL IHARETVRIL FREWTKLERA ASSSSTSDQA NESQGSISLV ASMAGAPSPE1140
 1141 SGESTVTVAG PEFWKLFYPL FRSLSHLSSV YAHLGMFQET VYYAEQAQKL AQTTGARLYL1200
 1201 AQCESWMASV YLRAGKLQRS LELANLSSSK LLGGDQSCTA VALACQLGGL YRDLKEFEAE1260
 1261 LRMIQRAEDT LIAIDREVAE VVGKDAEDED QEQPSSRARK GTVRTARLPI REKPAARQTT1320
 1321 RKAAATTTTT RRTTKKAPPA VEGTTTSSVP APSESTDIII STLKASIAVH KAVSFVNKKD1380
 1381 WNSAKETLQT SQALTKLARG KLGEMLAQAM CHFGQCQEQM TRDAVFSVIQ DSTLSFPAVC1440
 1441 KGASDRSSPA KPTQPQKGRS AASAASKRHP DFLVNLQAAH DCLVEAHSIA VVSGDAAMVH1500
 1501 RIAVMLQSTV LILSATGTSK PRLLGSQDLA TCSVEAAQNL TWRRERKALL LEKHAIRNEA1560
 1561 LEWPMPVSLG DASPGGRLSL APVSDMSRFQ RDYIDIIPKD WTVISVSLSD NKHDLCISRL1620
 1621 QAGHSPFVIR LPLERATSRD TDNESFNYQT GRAELLEIIE LANASCHDAR DMSAKGAKTA1680
 1681 WWSHREELDE RLKNLLDNVE QVWLGGFKGI FSQQKRCSEL LARFQKSFTH ILDKHLPSRK1740
 1741 QVWGKRSKAA SASASTANKV TLDPRILELF VGLGDVTDSN CGDLDDALND LLYFVVDILQ1800
 1801 FHGEPNAYDE IDFDAMSVDT FDALHSYYTA MQERKGRNGS SENRNAHTVL VLDKALHVFP1860
 1861 WESLPCMEGH AVSRVPSLEC LRRLLLDRKR PEATAEDHPN PPVSGRHVSR NSGTWILNPG1920
 1921 GDLKTTQTTF ETSLASSLGK QSNWHGMVGR VPTESEFEDA LRSREVLLYF GHGSGAQYIR1980
 1981 GRTVRRLQGG CRAAVLLWGC SSASLAEAGD FETHGPVWNY LIAGCPAVTG TLWDVTDRDI2040
 2041 DRLAVRVFEE WGLVGEGVFK EEPKAKGGKR TAATATGGRD VPPAAREPQT SLVQAVSKAR2100
 2101 DVCRFKYLTA AAVCVYGIPV YLNDE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle