YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145020356, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSVPE LAAAFPDGTT DFKPMRNTKG YDVSKPHISE TPMTLKNWHK HVNWLNTTFI  60
   61 LFVPLAGLIS TYWVPLQWKT AVWAVVYYFN TGLGITAGYH RLWAHSSYKA SLPLKIYLAA 120
  121 VGAGAVEGSI RWWSNGHRAH HRYTDTEKDP YSVRKGLLYS HMGWMLLKQN PKKQGRTDIT 180
  181 DLNEDPVVVW QHRNFLKCVI FMALVFPTLV AGLGWGDYWG GFIYGGILRV FFVQQATFCV 240
  241 NSLAHWLGDQ PFDDRNSPRD HVITALVTLG EGYHNFHHEF PSDYRNAIEW YQYDPTKWSI 300
  301 WIWKQLGLAH NLKQFRQNEI EKGRVQQLQK KLDQKRAKLD WGIPLEQLPV VSWDDFVEQS 360
  361 KNGKAWIAVA GVIHDVGDFI KDHPGGRALI NSAIGKDATA IFNGGVYNHS NAAHNLLSTM 420
  421 RVGVLRGGCE VEIWKRAQSE NKDVSTVVDS SGNRIVRAGG QATKVVQPVP GAQAA

Type	Start	End	Confidence
Cytoplasmic	1	51	0.92
Transmembrane Helix	52	74	0.91
Non-Cytoplasmic	75	82	0.71
Transmembrane Helix	83	103	0.85
Cytoplasmic	104	194	0.57
Transmembrane Helix	195	219	0.80
Non-Cytoplasmic	220	225	0.39
Transmembrane Helix	226	247	0.65
Cytoplasmic	248	475	0.52