YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39952201, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLSRVSFRM AAATKTAPAF RAAGALASNA RPAAKQLRFV SSSQQQQFAH GSKGRKMPAQ  60
   61 RSRATAPVAG LDATFTIRDG PVFHGTAYGA NSNISGEAVF TTSLVGYPES MTDPSYRGQI 120
  121 LVFTQPLIGN YGVPSKERDE YNLLKYFESP HIQCAGVVVS DIAEKYSHWT AVEGLNEWCA 180
  181 REGVPIISGV DTRAIVTHLR EQGSSLARIT IGQEYDADED ESFVDPGLIN LVKRVSTKAP 240
  241 FVVESPDPTF HIGLIDCGVK ENILRSLVSR GASVTVFPYD YPIHKVASNF DGVFISNGPG 300
  301 DPTHCQETIY NLRRLMETSP VPIMGICLGH QLLALAVGAR TLKLKYGNRA HNIPALDLTT 360
  361 GQCHITSQNH GYAVDTSTLP SEFIEYFVNL NDGSNEGMMH KTRPIFSTQF HPEAKGGPMD 420
  421 SSFLFDKYLA NVKMFKNSEK VFRDNRPSQL LLDILSKERV GVEPTPLAST A

Type	Start	End	Confidence
Signal Peptide	1	32	0.83
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	471	0.94