YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39951915, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRTLQERL VQLQETTSQI RTLIDRLGSL KLQPGSVPLG DDSDSHYDDG NVVTELGVEI  60
   61 TQGLRETEED LDLLREEVAD LKPGRDGSEA QKDRNRLRES ADRLGAELKR CRICFRKAQL 120
  121 SARQRLAAAQ RAERAMLVAS YAAPPPQSRS DASSPVLQQQ GGQQQQPPPP PRRRHHQQRS 180
  181 TVGNDPQDQV VGAAHNVTSS LRRTHDLMAA ELARSAYAAQ ALAESTAAMR ELDQRYSGLD 240
  241 GMLAASRDLL GTLLRSQKSD TWYLQTALYM LLATAAWLVF RRLLYGPMWW FVWLPLRLLG 300
  301 IGVGGGASLV SKGMSGSGAS IEVAGTAGSA TVVDMGGAAS VPTARVGAAE KAGRKEASDP 360
  361 ESEFEKVGKV IDEAKADADE TTIESAKGQD VYHESEGNPK KRMWQEPEEA AKQAASFAGD 420
  421 EDKSGERVKD EL

Type	Start	End	Confidence
Non-Cytoplasmic	1	260	0.69
Transmembrane Helix	261	280	0.93
Cytoplasmic	281	288	0.57
Transmembrane Helix	289	311	0.86
Non-Cytoplasmic	312	322	0.57
Transmembrane Helix	323	344	0.48
Cytoplasmic	345	432	0.81