YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145020598, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	30	0.93
Non-Cytoplasmic	31	36	0.86
Transmembrane Helix	37	59	0.92
Cytoplasmic	60	82	0.90
Transmembrane Helix	83	104	0.92
Non-Cytoplasmic	105	140	0.97
Transmembrane Helix	141	160	0.94
Cytoplasmic	161	171	0.81
Transmembrane Helix	172	193	0.88
Non-Cytoplasmic	194	213	0.78
Transmembrane Helix	214	235	0.88
Cytoplasmic	236	243	0.71
Transmembrane Helix	244	262	0.90
Non-Cytoplasmic	263	271	0.77
Transmembrane Helix	272	293	0.92
Cytoplasmic	294	302	0.78
Transmembrane Helix	303	321	0.95
Non-Cytoplasmic	322	327	0.70
Transmembrane Helix	328	350	0.77
Cytoplasmic	351	431	0.84
Transmembrane Helix	432	451	0.57
Non-Cytoplasmic	452	462	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGSELSTT ETFSLLSLSA ACVAILANTF QGDGEPLVAS LALSGLAFAA SFSMIRWLGP  60
   61 TFLKAGIKGA DLSKVQRREI PECMGAVCAI VYLLMIIVFI PFPFYKDIVA ATSGGGNRDV 120
  121 VLHTEHVQEG RFLHRFPHNK LASFLSAVIS LQSITLLGIG DDLFDIRWRH KFFIPAFAAI 180
  181 PLLVVYFVDF GVTSVVVPIP LQPYLGELLH LGPLYYIYMT AIAIFSPNSI NIFAGINGIE 240
  241 VSQSLVIALL IILNDCLYLS TSYPHPATDS HLFSLYFLLP FVGVSLALLY HNWYPARVFV 300
  301 GDTYCYFAGM VFVVVSILGH FSKTLILLLV PQIFNFVYSA PQIFGLVPCP RHRMPRFHAR 360
  361 TGLMEPSVTP WTPERQPRAP IAVALRLIAR FRLIRLTEDA DGRFVETTNM TIINLWLVWR 420
  421 GPLTERRLAT ELTVVQAVAG LFGLFVRHRL ALVVFKEDNW SL