YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38110042, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLQTAAAAN IIIPRALASQ QIRPLIASRR CYATNTSAND SNATQRRRAV TPFNDDGRVP  60
   61 WTELSGGEKT SRAVQQTFNF GMVLVGMALT GGIGYLLYSE VFSPDSKVAY YNRAVDRIRK 120
  121 DPRCLELLGE SKSITAFGEE TSNKWRRARP IASTLRKDSQ GNEHMMIHFN LEGSKGRGMA 180
  181 NMHLIKRVGA EDFEYRYFYL DVVGHQRIYL ENSEATGRDG SGKKTIFGIR FSIFAPFTQT 240
  241 DWHVASTIWR DRIAHEVARM IARPRSAPDT YITVPDPAHE ALPISLRPLT YIHIIRPEDV 300
  301 ADPSSARRGQ IPLPLSEAPQ AI

Type	Start	End	Confidence
Cytoplasmic	1	76	0.51
Transmembrane Helix	77	98	0.51
Non-Cytoplasmic	99	322	0.96