YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39951641, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.95
Transmembrane Helix	19	40	0.92
Cytoplasmic	41	102	0.95
Transmembrane Helix	103	119	0.95
Non-Cytoplasmic	120	150	0.88
Transmembrane Helix	151	170	0.92
Cytoplasmic	171	405	0.98
Transmembrane Helix	406	429	0.88
Non-Cytoplasmic	430	450	0.93
Transmembrane Helix	451	475	0.90
Cytoplasmic	476	495	0.88
Transmembrane Helix	496	517	0.87
Non-Cytoplasmic	518	554	0.94
Transmembrane Helix	555	578	0.88
Cytoplasmic	579	591	0.86
Transmembrane Helix	592	618	0.79
Non-Cytoplasmic	619	622	0.52
Transmembrane Helix	623	643	0.87
Cytoplasmic	644	663	0.88
Transmembrane Helix	664	686	0.80
Non-Cytoplasmic	687	688	0.42
Transmembrane Helix	689	710	0.72
Cytoplasmic	711	893	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQEDQEKL TENKSLSGLY STLVPVLIAS GAYLAIFLIL RRSQRRWYAP RTYIGSLRPG  60
   61 ERTPELPNGL FNWFGQFWKI PDTYALQHQG LDAYLYLRYM RMSIVITFVG CCITWPILFP 120
  121 VNITGGGGQE QLDMLSYANV NAGSQEGRYR FFAHAITAWI FYGFILYLIF RELVFYINLR 180
  181 QAFLLSPLYS RRISSRTVLF TSVPDAYLDE AHLRQVFGPS VRNVWITYES KEVDELVKKR 240
  241 DERAYRLEKA EVKLIKLADK NRRAALKKGG SDAEADASKN EANQLDTESG SIAARWVPQG 300
  301 KRPTHRTGAL GLIGSKVDSI DYCRDELHRL IPKTHEAQRQ YRSGTSKKIP GVFVEFRSQG 360
  361 EAEAAYQVVA HHRGLQMAPR YIGITPGDVI WSSLKVSWWQ RVVRRYLVLA FIAALIIFWA 420
  421 FPVLVVGIIT NIDKLKQDVS WLSWLNYIPD AIMGVITGLL PSVALAILMS LVPIIMRLCA 480
  481 KLSGEPSHSR CELFTQNAYF CFQIVQVFFV TTVGSAGTEL GPQLQKMALD PQLIPQTLAD 540
  541 TLPKPGNFYN NYFLVQGLTI AASVLSQIVG FVIFQLMYRF LASTPRALYQ KWATLSAISW 600
  601 GSTLPVYTMI TCIAIIYAVI TPLVLGFACL AMCLFYIAWR YNVLFVTDTK IDTRGLIYPR 660
  661 ALKQLFVGVY VAEICMIGLF GASTAIGPAV LMAALLLFTV LFQLTLTNAL DPLLYNLPQT 720
  721 LLAEEELLLL APQNGALSAG PSGATGTTMA TNGFASNDAH SPADIKDTEA AAIATVPSAK 780
  781 KGNILSRFFM PWMYADYATL RKLVPQGTEL DLDLDNLYSD EVNGNAYYPP AVTSTPPLLW 840
  841 IPRDAAGVSK QEIAHTGKVI HITDEGCELD ENGKLVWDRE STRPPVWEEK VPY