YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39951619, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	299	0.59
Transmembrane Helix	300	319	0.75
Non-Cytoplasmic	320	324	0.57
Transmembrane Helix	325	347	0.72
Cytoplasmic	348	425	0.72
Transmembrane Helix	426	445	0.72
Non-Cytoplasmic	446	454	0.40
Transmembrane Helix	455	472	0.61
Cytoplasmic	473	487	0.89
Transmembrane Helix	488	512	0.86
Non-Cytoplasmic	513	525	0.82
Transmembrane Helix	526	548	0.87
Cytoplasmic	549	560	0.75
Transmembrane Helix	561	583	0.90
Non-Cytoplasmic	584	636	0.91
Transmembrane Helix	637	658	0.85
Cytoplasmic	659	735	0.98
Transmembrane Helix	736	756	0.93
Non-Cytoplasmic	757	763	0.71
Transmembrane Helix	764	786	0.90
Cytoplasmic	787	793	0.79
Transmembrane Helix	794	811	0.77
Non-Cytoplasmic	812	844	0.68
Transmembrane Helix	845	869	0.85
Cytoplasmic	870	879	0.64
Transmembrane Helix	880	902	0.54
Non-Cytoplasmic	903	912	0.55
Transmembrane Helix	913	934	0.89
Cytoplasmic	935	947	0.54
Transmembrane Helix	948	976	0.71
Non-Cytoplasmic	977	994	0.47
Transmembrane Helix	995	1019	0.85
Cytoplasmic	1020	1056	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPIQHAPDS AAEPEDPADI QDNQQQSFPL RNLAPNTRRP TRAELSPSAA PRAIAASTSI  60
   61 RGPLFDTTAD GHSALDPSPQ QPSLSPSFNT RQAFGAPSAG RQPSSSSSSS IASHVNAAAS 120
  121 RQEKNDVPVQ TDADIQSTTG LDDEATTNPM RKATPALRDS DEFRSAPSYG AVSLDHVKPP 180
  181 GANGHFSTGT TIDADELARI ASQNSSRRRK SEDINVKSRR SGEELGASSV LGGLEGRFGV 240
  241 TEGGALDDPK HGDDSSSDGG ISPEAIEDEN NPPDNSPYPQ VRASVSPVDN TSLSINTPRM 300
  301 WALSVLFSIL GSSTNLFFSL RYPSVSITPV IALLLVHPLG LAWDYLLKRK GDPDEEFVEG 360
  361 VQVPGQWDET HERSKLQRLR LWLAQGRWNE KEHSCVYVSS NVSFGFAFAT DVIVEQTQFY 420
  421 KQDASITYQL LLTLSTQILG YTFAGLTRRF LVRPSGMIWP STLMSAAMFT TLHKEENKPA 480
  481 NGWKISRWNF FYVVFISAFL FYFLPGLLFP ALSYFNVITW FAPKNVVVAN LFGVVSGLGL 540
  541 FPLTFDWAQV AYIGSPLLTP FWAAMNVVGG LVIVMWILAP LAYYSNWMYS SYMPILSAAV 600
  601 FDNTGKVYDV SKILTKDFIF DAEAYKNYSR VFLPITYVLS YGVQFAGLAA LLTHTACWHG 660
  661 RDIWTQWTKS LQEARQEGKV ATYQPVATSS DDYGRSNTNG AQARREASTS SAFFEDIMSR 720
  721 EDVHNRLMKR YKDAPMHWYL MTFVSMTAIG IFVVEYYPIH LPWYGLLLAL GICSILFIPI 780
  781 GIVMAVTNQH TSIYLICQLV CGAIFPGRPV ANMVFVTYGY ISSSQGIKFA ADLKLGHYMK 840
  841 IPPRILFMVQ MVATVVSSLT QIAVLNWMFR NIPGICTPQA INGFTCPIAR VHFNGSILWG 900
  901 VVGPSEFFGR GATYRPLVWC FLVGAIAPIP LWYISKGKKD SIIRKINLPV LFGSLSWIPP 960
  961 ATGLNFSVWA LVCYLFNSLL KNRATAWWAK YSMTLSAALD SALASGIVVV FFTFIYPGVM1020
 1021 DGFSWWGTEV YKQGCDWQAC AYMSVPEGGR FGPDTW