YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39951477, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	293	0.66
Transmembrane Helix	294	321	0.85
Cytoplasmic	322	437	0.79
Transmembrane Helix	438	459	0.82
Non-Cytoplasmic	460	460	0.40
Transmembrane Helix	461	481	0.76
Cytoplasmic	482	532	0.86
Transmembrane Helix	533	553	0.93
Non-Cytoplasmic	554	564	0.72
Transmembrane Helix	565	584	0.94
Cytoplasmic	585	595	0.75
Transmembrane Helix	596	619	0.85
Non-Cytoplasmic	620	629	0.85
Transmembrane Helix	630	652	0.90
Cytoplasmic	653	662	0.87
Transmembrane Helix	663	684	0.88
Non-Cytoplasmic	685	736	0.96
Transmembrane Helix	737	757	0.94
Cytoplasmic	758	955	0.99
Transmembrane Helix	956	975	0.87
Non-Cytoplasmic	976	991	0.83
Transmembrane Helix	992	1014	0.81
Cytoplasmic	1015	1026	0.74
Transmembrane Helix	1027	1047	0.91
Non-Cytoplasmic	1048	1068	0.89
Transmembrane Helix	1069	1089	0.91
Cytoplasmic	1090	1098	0.80
Transmembrane Helix	1099	1120	0.88
Non-Cytoplasmic	1121	1158	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSRSRSRR NSDLSDAPSP TDTRAPSRRE TGPSTNISTQ DYGLSESFQS TDTVRRRPEA  60
   61 GYGSMISPTP GNLQPQAEGS TSDRPQGGSR SSQPAMRSPM IGGDRARLNP RKPPISRRAS 120
  121 SNTQAPHRGE VFSVDDATDE VEAQRQGSYT HSTTRRRTAA PPILSRVHSR TSNVEEEDED 180
  181 SEQPQAHSTR PSSRGNMDRP NDDNEEHLLD LSDGGDDVEE DHVSEEDDDG DLSDAESFTL 240
  241 KDRQQAINET HPFGIRLWKP ALYKKDRSVQ KTAEGDIHST PGGRVSSWLL LFNLIWTLCF 300
  301 GWWMAAIAFI GAVVCFLFAA APSGREYGRI LWGLAGYLFY PFGKFISLEQ QEAYLDEDQG 360
  361 EGRSISEYEQ WQSGDLEYGR LFFGPDRNRS IVGRSRRSID SAPSETDSLL GGRSARSANR 420
  421 SDSDLPSSKR RLFGRGKWTI GRVIFFLFFY LLLMPSLFIV SGICWLLVFW IPMGKVTMLL 480
  481 IDHLRRHPLA LNFGSDISLA RDPDTPHSST IIVCTYRAVG SKYWKYTVDG TNIFLINLMA 540
  541 VVLFVVLDWL VLAGVFHVDN FLTSQAFLFV AGLFSIIPLA YFIGQAVASI SAQSSMGLGA 600
  601 AINAFFSTIV EVFLYCVALK QGKGQLVEGS IVGSIFAGVL FLPGLSMCFG AIKRKTQRFN 660
  661 ARSAGVTSTM LLFAVIGAFG PTLFYQIYGT HELNCLDCVS FVEGAPHDPR ARDCRRCFFS 720
  721 QTPALDDRFY LEAVRPYCYL AACMLFFSYI IGLWFTLRTH AAVIWNTEID EKKHEDHPHF 780
  781 HQPARSVMHS VADTTGTDIR DTNAYKRILG HSLRQAGLHP HDSIGGSSSG TATGTNGRGN 840
  841 GSATTPHLVP PKGSMSSDHG VHIPGLSEAE NQCLVQQVAE IAATAATVAV LPRATSTRNV 900
  901 HGSGHRTSQT PTPALRSVAT FPTEDEATAQ AHAAHSTAAG GGGHGHDAPN WSRLKSSVIL 960
  961 MGATVLYAII AEILVDSVDF VLEGYSIDEK FLGITLFALV PNTTEFLNAI SFAMNGNIAL1020
 1021 SMEIGSAYAL QVCLLQVPAL VLYSAFYSPT TPPVEGPEGD LARYTFSLLF PQWDMVTVIL1080
 1081 CVFLLSYMYG EGKSNYFKGS ILLLSYLVVI VGFYFSGYTA GANDLGITRF DRMGGDGAYV1140
 1141 SHTDSFKTIG RKSSGFAY