YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7520577, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.94
Transmembrane Helix	8	29	0.93
Cytoplasmic	30	39	0.81
Transmembrane Helix	40	63	0.88
Non-Cytoplasmic	64	87	0.94
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.89
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.79
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	178	0.89
Transmembrane Helix	179	201	0.86
Non-Cytoplasmic	202	220	0.92
Transmembrane Helix	221	242	0.87
Cytoplasmic	243	260	0.81
Transmembrane Helix	261	281	0.92
Non-Cytoplasmic	282	288	0.67
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	322	0.79
Transmembrane Helix	323	343	0.82
Non-Cytoplasmic	344	353	0.63
Transmembrane Helix	354	373	0.85
Cytoplasmic	374	392	0.84
Transmembrane Helix	393	414	0.89
Non-Cytoplasmic	415	425	0.83
Transmembrane Helix	426	447	0.88
Cytoplasmic	448	547	0.91
Transmembrane Helix	548	569	0.90
Non-Cytoplasmic	570	606	0.89
Transmembrane Helix	607	625	0.94
Cytoplasmic	626	737	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYAWI IPFVPLPIPM LIGVGLLLFP TATQNLRRMW AFPTVLLLSI VMIFSIXLSI  60
   61 QQINSSSIYQ YVWSWTINND FSLEFGYLID PLTSIMSMLI TTVGILVLIY SDNYMGHDQG 120
  121 YLRFFAYMSF FSTSMLGLVT SSNLIQIYIF WELVGMCSYL LIGFWFTRPL AANACQKAFV 180
  181 TNRVGDFGLL LGILGFYWIT GSFEFRDLFQ IFNNLIYKNE VNSSFVTLCA VLLFAGAVAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPYI MNFISFIGII 300
  301 TVFLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSVIHSMETL VGYSPDKSQN MVLMGGLTKH VPITKTSFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAVIAWATAG LTAFYMFRIY LLTFEGHLNV HFQNYNGKEN TPFYSISLWG 480
  481 KEDSKRISKN FRLLKINNNN ESSSFLKKKT DQIDENIRKI KRAQPFINIV RFQNKKLDSY 540
  541 PYESDNTMLF PLIVLVLFTL FVGSLGIPFN QEGADLDILT KWLTPSINLL HQKSNDSMDW 600
  601 YEFCKDAIFS VSIAYFGIFL ASFLYKPIYS SLKNFDLINS FVKTGPNRNL WDKILNGLYD 660
  661 WSYNRAYIDA FYTTSFTGTI RGLAQLTHFF DRRIIDGITN GVGVLSFFVG EGIKYVGGGR 720
  721 ISSYLFFYLS CVSIFLL