YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38109667, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.91
Transmembrane Helix	62	82	0.89
Non-Cytoplasmic	83	128	0.86
Transmembrane Helix	129	150	0.85
Cytoplasmic	151	161	0.80
Transmembrane Helix	162	184	0.61
Non-Cytoplasmic	185	195	0.48
Transmembrane Helix	196	217	0.82
Cytoplasmic	218	223	0.42
Transmembrane Helix	224	250	0.78
Non-Cytoplasmic	251	256	0.43
Transmembrane Helix	257	276	0.91
Cytoplasmic	277	282	0.44
Transmembrane Helix	283	307	0.88
Non-Cytoplasmic	308	386	0.52
Transmembrane Helix	387	409	0.74
Cytoplasmic	410	414	0.64
Transmembrane Helix	415	435	0.86
Non-Cytoplasmic	436	460	0.41
Transmembrane Helix	461	480	0.73
Cytoplasmic	481	486	0.44
Transmembrane Helix	487	511	0.77
Non-Cytoplasmic	512	518	0.52
Transmembrane Helix	519	541	0.87
Cytoplasmic	542	553	0.49
Transmembrane Helix	554	576	0.89
Non-Cytoplasmic	577	599	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQASPSPR KPRARKAKKI VDNDQEQTVL AVRKNEALVR VPTFPLAAFL WPARGSPTQW  60
   61 ETLALTLMIV GVFRWAAGLW GYSGFHKPPL FGDYEAQRHW MEVTTQLPIS QWYFHDLQWW 120
  121 GLDYPPLTAY HSWLLGKIGS LINPAWFALF SSRGSDDPVL KIFMRATVLV SEYLIYVPAT 180
  181 VVFVRRFGRL GGVDRWSSSV ALVAILMQPG LILIDHVHFQ YNTVMLGFVL ASMSSMLAGR 240
  241 LLWASVFFVA ALGFKQMALY YAFSIFAYLL GACVFPKLNL PRLLAIAAVT AISFAILVLP 300
  301 LIIGALYDAQ RGIDSRPDLD GPPPPLPIFG FLSEYLDTDA VYYPVVEQMI QLIHRVFPFA 360
  361 RGLFEDKVAN FWCAINVVFK LRKYPAALLQ QAALGATLAA IVPPNLILFL RPRKALLPSA 420
  421 FAATAWGFFL FSYQVHEKSV LLPLMPMTIM LAGSNGLARE VRAWVGFANI LGAWTMFPLL 480
  481 QRVDLRVPYV VLTLLWAYLL GLPPTSTSAY FDDEGPATAG QWILFLVHGA FYLAMGAWHV 540
  541 VDRFFVPPIN MPDLWVVANV GLGAVGFALC YFWCTWKLLV DADLIPKSWY NTKAKVKKG