YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145013229, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQRGPSGYG IPNAPNPFGG PSSQPDGQGS ALDAIREQTS KIEDMLDSVS EPIKPYLPAI  60
   61 GRFLIVVTFI EDALRILTQW SDQVYYLRDY RGFPRGFPQL FLIINVVAMV VCSGMVITRR 120
  121 FSEYAVGGLI AVVITQALGY GLIFDLNFFL RNLSVMGGLI MVLSDSWVRK TVNFAGLPQL 180
  181 EEKDRKMYFQ LAGRVLLIFL FIGFVFAGEW SIWRVMVSIV GLVACIMVVV GFKAKFSATL 240
  241 LVVILSIFNL FVNNFWTLHE HHPHKDFAKY DFFQILSIVG GLLLLVNSGP GQFSIDEKKK 300
  301 VY

Type	Start	End	Confidence
Cytoplasmic	1	58	0.84
Transmembrane Helix	59	77	0.60
Non-Cytoplasmic	78	96	0.70
Transmembrane Helix	97	117	0.91
Cytoplasmic	118	123	0.68
Transmembrane Helix	124	144	0.87
Non-Cytoplasmic	145	148	0.70
Transmembrane Helix	149	168	0.79
Cytoplasmic	169	186	0.93
Transmembrane Helix	187	207	0.90
Non-Cytoplasmic	208	211	0.78
Transmembrane Helix	212	232	0.90
Cytoplasmic	233	238	0.76
Transmembrane Helix	239	258	0.93
Non-Cytoplasmic	259	271	0.83
Transmembrane Helix	272	291	0.90
Cytoplasmic	292	302	0.81