YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38109584, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTVKNIAYY AFHPVELRAI IQWKIWHEPV HTRNPSKERP TETECFKYLD LTSRSFAAVI  60
   61 KELNPELLMP VCIFYLALRG LDTIEDDMTI PNDKKIPLLR NFADFMDQDG WTFNENGPNE 120
  121 RDRELLVHFD QVITELKLVK KPYYEIIRDI TVKMGNGMAD YVLKTENTTN CINTVEEYEM 180
  181 YCHYVAGLVG EGLTRLFVVA ELANPKLLER MDLAESMGQF LQKTNIIRDV HEDYIDKRSW 240
  241 WPRSVWSKYA KEYDDLFKPE NRQQAVYCCS ELVLNALKNV EDCLYYMAGM REQSVFNFVA 300
  301 IPQTMAIATL ELVFQNPKIF ERNVKITKGD ACRIMLRSTQ NLRLVTDLFK EYTRKIHQKN 360
  361 DPRDPNYAAI SAQCGKIEQF IETIFPSQDP KVLEMAQKDV KMSEKPGMDT SEAVVLILAV 420
  421 IAMFVFSGGL MVGLAWLMGA QFNNFFSSID AGMKPSPLPS GHQEL

Type	Start	End	Confidence
Cytoplasmic	1	413	0.59
Transmembrane Helix	414	438	0.92
Non-Cytoplasmic	439	465	0.64