YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38109415, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPLDNAMK SKNAILAFTG LVTGAAVWAI WGGDMFPKES DPKGDPDTWT HEEMRRWLAA  60
   61 RLARFLDRPL FPWKKLIVGF SLAHYFFESF LSLRQYQVLQ KTKPPKVLEQ QISQEVFDKS 120
  121 QAYGRAKAKY GFVSKLWGQI QNIAFIQYDV LPKLWAWSGR LLLSYAPARF TGEISQSIVF 180
  181 VLAFVMIQQV LSLPTSIYHT FVLEEKFGFN KQTPKLFITD LIKSQLLTVV LTPPILAGFL 240
  241 KIIQKTGDQF FYYLWMFGAF LQVFMITVYP IAILPLFNKL SPLEPGELKT GVEALAKRLN 300
  301 FPLHELYVID GSKRSAHSNA YFFGLPWKKH IVIYDTLIEK SETQEVVAVL AHELGHWKLG 360
  361 HTTSLFGIAQ AHFFYIFTLF SVFINNKSLY ADFGFVLERP IIIGFLLFSD ALAPMDVLIQ 420
  421 LGMNILSRKF EFQADDFAKG LGYPVELARS LIKLQIQNLS NMDADWMYAS YHFSHPILSE 480
  481 RLRALGWQSN EKIDIKEKKK TDEGVVKASG RDEL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.58
Transmembrane Helix	13	32	0.72
Non-Cytoplasmic	33	177	0.53
Transmembrane Helix	178	202	0.69
Cytoplasmic	203	220	0.46
Transmembrane Helix	221	243	0.74
Non-Cytoplasmic	244	250	0.52
Transmembrane Helix	251	273	0.91
Cytoplasmic	274	361	0.55
Transmembrane Helix	362	384	0.79
Non-Cytoplasmic	385	400	0.53
Transmembrane Helix	401	422	0.78
Cytoplasmic	423	514	0.60