YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39978017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPDMKPAP IPKSKSTTTL TSDSEPVMTP EDSTASPSRS HPDSSSPHDN AEETCAILPE  60
   61 TPTLSATTPK SPRLSRNPSF SGSSSYQEDW EALPPLDRLT VLDLLDNFAL PHQLELQLGK 120
  121 IQKGLSKSRQ AIRARGQVAR DRMVEEWRQR IPADEQLDRY RKRMRDSVEK LGRRWNDTKV 180
  181 VTAREKVSFI CGVMNIFISG YLMGGLPEYM HWWYTLQIFY FLPIRYYTYH RRGYHYFLAD 240
  241 LCYFVNFLLV LSIWFFPNSK RLFTAVYCLA FGNNAVAIVM WRNSLVFHSF DKVTSLFIHI 300
  301 MPCATLHCMV HLIDKELQEK MFPAVYLIRH SPPGSPTAYA NVISMLSWST IPYAVWQLSY 360
  361 YFFITVRRRE KIAAGRPTSF TWLRKSYSKT WIGRIVLGLP DVLQEPAFML IQYSYAVLTM 420
  421 LPCPIWFYSR YASASFLMFV FAWSVYNGAT YYIDVFGKRF QKELEAMRAE VAKWQSHPDL 480
  481 GSSMGSPSMG PSHESADEAE DEALLSPEAT KRRPRDSVNS ISLLSGDAEI LATGVDSSAK 540
  541 DVARERK

Type	Start	End	Confidence
Cytoplasmic	1	186	0.98
Transmembrane Helix	187	205	0.88
Non-Cytoplasmic	206	209	0.67
Transmembrane Helix	210	229	0.58
Cytoplasmic	230	235	0.54
Transmembrane Helix	236	256	0.95
Non-Cytoplasmic	257	262	0.53
Transmembrane Helix	263	285	0.86
Cytoplasmic	286	292	0.56
Transmembrane Helix	293	313	0.75
Non-Cytoplasmic	314	341	0.67
Transmembrane Helix	342	364	0.76
Cytoplasmic	365	390	0.74
Transmembrane Helix	391	416	0.50
Non-Cytoplasmic	417	431	0.48
Transmembrane Helix	432	453	0.77
Cytoplasmic	454	547	0.81