YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39977761, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTSAELLN GANGRINDHD HVLRPRPRKP LHSQLSQISN ASDTGSTFDA SSEHGASISS  60
   61 GRSTPVPEDA PPSVKILSTA RQQVRREQRE ILRSRRRLFP PTDFESRLSH LDPNSDYRDF 120
  121 HGFFNLFWIG LAIMAITTML RNIKDTGYPM RVQIWGLFTV KVWELALIDA AMVLSTYVSL 180
  181 PLHRVFRAAP AGSLLTWARG GMAIMSIYEV LWLALWVATP FLLDWTWTAQ VFLLLHTMVL 240
  241 LMKMHSYVFY NGHLSETEKR LRALDNPSTA SKAPAYLYPS ENKVASPKRT TAPKFFRDNK 300
  301 ADETSSPLET STLSKDVDDR VGGDWHVDGE DDDISQLRED LARELTSPMG NTAYPRNLTF 360
  361 SNYVDYLFCP TLCYELEYPR TEKIDWQSLI SKIIAVFGCI FLLTIVSEEF ILPVLIESSQ 420
  421 RLAVPGMSAS ETILILCETI SWLLFPFMVT FLLVFLVIFE YVLGACAEMT RFADRRFFAD 480
  481 WWNSTDWMEF SREWNVPVHA FLRRHVYGAS RPHIGKPYAT VITFLISAIG HEIVMACITK 540
  541 KLRGYGLVCQ MLQLPIFALQ RTKWIRGKHT ANNVFFWCSM IMGLSMMCSL YVLI

Type	Start	End	Confidence
Cytoplasmic	1	121	0.97
Transmembrane Helix	122	140	0.94
Non-Cytoplasmic	141	161	0.84
Transmembrane Helix	162	183	0.85
Cytoplasmic	184	194	0.84
Transmembrane Helix	195	216	0.88
Non-Cytoplasmic	217	225	0.68
Transmembrane Helix	226	250	0.76
Cytoplasmic	251	388	0.99
Transmembrane Helix	389	412	0.82
Non-Cytoplasmic	413	442	0.86
Transmembrane Helix	443	466	0.85
Cytoplasmic	467	572	0.72
Transmembrane Helix	573	593	0.95
Non-Cytoplasmic	594	594	0.89