YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38109009, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVKHSLQRL RSPSRGLSLT LHILGLASFY QSFRYLYIFP TPISSAYGGS GQFLTIIGLG  60
   61 LSMIAFGLGF LADVTLSPAL FKAKNFVAVC ANPLEVLISI LYWGIAIYDK ELLMPSEYSL 120
  121 PWAVDIGYHA APAIFLTIDL LFFSPPWTVK ANGAVGLSMV LAFLYWGWIE HCAGHNGWYP 180
  181 YPILGILSTP QRAVFFAFCA ALEASSTMAL KWLYGKVNGI EKFKREAIKP AKM

Type	Start	End	Confidence
Cytoplasmic	1	15	0.94
Transmembrane Helix	16	38	0.84
Non-Cytoplasmic	39	52	0.88
Transmembrane Helix	53	74	0.92
Cytoplasmic	75	85	0.81
Transmembrane Helix	86	106	0.95
Non-Cytoplasmic	107	125	0.86
Transmembrane Helix	126	143	0.95
Cytoplasmic	144	150	0.76
Transmembrane Helix	151	169	0.92
Non-Cytoplasmic	170	192	0.85
Transmembrane Helix	193	215	0.91
Cytoplasmic	216	233	0.99