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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39968789, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNKDDGAT PPRRQRAPTI TIDTTAVSAS TDAGAPADRP SQANGQTSSP ISPTDDGNSP  60
   61 TTIVEPLSQS WSRGQPSNGG HSASSSISGR PEFHPTTSFE SNASRPTSPH NVSSPVASRG 120
  121 QGHTQGFLAV PHNHRSRQNS VDSDDGSRSM ASQGETIAVS PSYTTEKAPK STDPMTNDKI 180
  181 MNDPDALKPD VGKEDTFVVE DNPFAFSPGQ LSKMFNPKSL SAFYKLGGLS GLEKGLRTDR 240
  241 KAGLSVDELG LEGKVTFEEV TGQKSEKETN TGAGKPQANR ARSGSEDNFV DRKRVYKDNR 300
  301 LPERTGKSLL QLMWITFNDK ILLLLSGAAA ISLAVGLYEA FSPDHDPSKQ KVEWIEGVAI 360
  361 IVAILIVVLV GSLNDWQKER QFAKLNKKKT DRPVKVIRSG KAQEISVHNL LVGDVVHLET 420
  421 GDLIPVDGVL IEGHNIKCDE SQATGESDLI KKRNADEVYA AIENNGDLKK MDPFIQSGAR 480
  481 VMEGVGTFMV TATGVNSSYG QTLMSLQDDP EITPLQQKLN VIADGIAKIG GAAALLLFLV 540
  541 LFIKFLVGLP KQPPEITPAQ KGQQFIRIFI VVVTIIVVAV PEGLPLAVTL ALSYATKKMV 600
  601 KQNNLVRQLK ACEVMGNATT ICSDKTGTLT QNKMKVVEGT VGTTHRFSAD DFSTGDSENP 660
  661 SSPEVKPLSP TEFTGLLSEP VKEVLLRSIV LNSTAFEGEV DGEQSFVGSK TETALLLFAR 720
  721 EHLAMGSVSE QRENSKTLQL IPFDSGRKCM GIVAELPKGG ARLYVKGASE ILLEKCTQII 780
  781 RDPSKDATTA TLTDENRTGL NSLIENYAKK SLRTIGICYR DFDRWPPARA RRNDGENDEV 840
  841 KFEDIFKQMT LLGVVGIKDP LRDGVREAVK DCQRAGVVVR MVTGDNIMTA EAIARDCGIL 900
  901 QPDSIIMEGP KFRNLSKREQ EDVVPRLHVL ARSSPEDKRV MVKRLKDKGH IVAVTGDGTN 960
  961 DAPALKMADV GFSMGVSGTE VAKEASAIIL MDDNFTSIVV ALRWGRAVND AVKRFLQFQL1020
 1021 TVNVTAVLLT FVSAVSNDRE ESVLTATQLL WVNLIMDTLA ALALATDPPH PTVLDRKPEP1080
 1081 RGSPIISVTM WKMILGQALY QLGITYLLYF GRQRVLPAYD QDVQDAQIAT LVFNTFVWMQ1140
 1141 IFNQWNNRRL DNRFNILEGI TKNPIFIAIS LAMCGAQALI TNYGSFAFNI AEEGQTPAMW1200
 1201 GYAIFLGFLS IPFGMIIRLI PDAFVASLVP ESLRRRARSK VPGVTVSDDE ERFQAYPEPF1260
 1261 SEVRDELAFI KRVKGGRLNN LKYSLKNPRE AFMPRYKSPS GSRSHSRSHS RSDSIPMPTT1320
 1321 PTRADSISSF AATPDSRRRS KSSRSRSNSA LGAATVMAGI VAGGVGATWS PIDRDRDFGV1380
 1381 FPARQPSPLN KRQDSDPMDG AGASTSNVSG MSVPEESNEE DKPGPTVPKL GVPKPPPGRK1440
 1441 SHESSKE

YRC Informatics Platform - Version 3.0
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