YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39968745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	154	0.99
Transmembrane Helix	155	177	0.92
Non-Cytoplasmic	178	216	0.96
Transmembrane Helix	217	239	0.92
Cytoplasmic	240	259	0.92
Transmembrane Helix	260	281	0.91
Non-Cytoplasmic	282	287	0.82
Transmembrane Helix	288	310	0.93
Cytoplasmic	311	344	0.93
Transmembrane Helix	345	364	0.81
Non-Cytoplasmic	365	371	0.64
Transmembrane Helix	372	391	0.62
Cytoplasmic	392	408	0.69
Transmembrane Helix	409	433	0.84
Non-Cytoplasmic	434	440	0.72
Transmembrane Helix	441	462	0.87
Cytoplasmic	463	524	0.74
Transmembrane Helix	525	545	0.77
Non-Cytoplasmic	546	588	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRYSLRQT PRKKELFEGM VETPARRSTR RKSQFPETDG DSSSAAESEA VAKPANTTRR  60
   61 RVPKFIEHID ETAESDAPSE YSPVSATAPN LSNGDEMARR KVSPDGVAAT SDVKIKTEET 120
  121 PETEPLIDGK LKPKAVDGWI PGTDHRIDSS GFKDFGGPLG VTTMMICFPL LMYYMWIGST 180
  181 YYNGKFPLPG DGESLGDFVK KLGTLAYTGA FPHLRAWVMF WTFFIFQGTL YCIAPGVWGK 240
  241 GKPLAHEGGK QLDYYCSAQW SWYITILTAS GLHLSGFFPL YTIIDEFGSI MSVCIISGFL 300
  301 ISIVAYFSAI QRDAQHRMTG SFLYDFFMGA ELNPRMFGIL DFKMFFEVRL PWFIMFLTTL 360
  361 GLCARQYEQY GYVTGEAYFV LMAHFLYANA CAKGEELIIT TWDMYYEKWG FMLIFWNIAG 420
  421 VPLTYVHCTL YLANHDPSEY AHSKPVLALM FIGYLFVYWV WDTCNSQKNR FRAMERGHLV 480
  481 PRKSFPQLPY QTIQNPRKIP TQTGDSLLAD GWYGMARKVH YTCDLYFALN WGLITGFASP 540
  541 FPWFYPVFFA GMIVHRAARD IARCREKYGP AWEEYEKQVP YLFIPYVI