YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39968647, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKQGGQPPS ATPQTTFMLH HPVAQTQAIL RHQQAVFDAT ATSPRASRKD KYLAAEASTW  60
   61 PLTLFQRARA LAGLIALPPL PPFALDVIDG ETTGAMPSTR RLPTTRVISP SPTPSEIDAQ 120
  121 SPSATSTSQD TSYFAPVTRS AARKRLATPQ PVEEHINEDE EENNPDLRRA RTRSRSPMDH 180
  181 QRIKPLSSTS TSNSKSKTSS GSKQASTVNG QINGNGKSVE PNGHLKPAAA MSTWDTWRET 240
  241 WSRSPSPLGL IPIHRHWRTF VHKHEVPRKL LHVSIGFLVV WLYLSGTQAS SVTPWLMALL 300
  301 VPITAVDLLR HHHSGFNRLY VKVLGALMRE SEFAGYNGVI FYLLGAWTVL YFFPKDVGVV 360
  361 GTLLLSWCDT AASTFGRLYG AYTPRIRRGK SLAGSTAAFI VGVATAGAFW GWLRPTYGPF 420
  421 QGDDAFMFTG SLALPQAVCE AVGVSREAAT ITGPLALGVM SLWSGFVASA SEVVDVFGWD 480
  481 DNLTIPVLSG AFIWGFLKVF G

Type	Start	End	Confidence
Cytoplasmic	1	267	0.92
Transmembrane Helix	268	285	0.89
Non-Cytoplasmic	286	291	0.77
Transmembrane Helix	292	312	0.90
Cytoplasmic	313	332	0.93
Transmembrane Helix	333	353	0.93
Non-Cytoplasmic	354	358	0.84
Transmembrane Helix	359	381	0.89
Cytoplasmic	382	391	0.90
Transmembrane Helix	392	413	0.93
Non-Cytoplasmic	414	424	0.87
Transmembrane Helix	425	444	0.77
Cytoplasmic	445	450	0.69
Transmembrane Helix	451	470	0.87
Non-Cytoplasmic	471	481	0.63
Transmembrane Helix	482	500	0.82
Cytoplasmic	501	501	0.83