YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39968603, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	279	0.98
Transmembrane Helix	280	302	0.89
Non-Cytoplasmic	303	310	0.83
Transmembrane Helix	311	334	0.86
Cytoplasmic	335	349	0.93
Transmembrane Helix	350	372	0.92
Non-Cytoplasmic	373	385	0.86
Transmembrane Helix	386	406	0.91
Cytoplasmic	407	418	0.82
Transmembrane Helix	419	439	0.94
Non-Cytoplasmic	440	447	0.79
Transmembrane Helix	448	469	0.93
Cytoplasmic	470	487	0.89
Transmembrane Helix	488	507	0.96
Non-Cytoplasmic	508	537	0.88
Transmembrane Helix	538	557	0.90
Cytoplasmic	558	570	0.77
Transmembrane Helix	571	592	0.92
Non-Cytoplasmic	593	599	0.83
Transmembrane Helix	600	620	0.94
Cytoplasmic	621	642	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQYQGGAP AQRPMAPAPL FSTAAPQYWS NPRQAPLMAP PYQQLVLPQP PAPQYEAEGR  60
   61 PTNEYPLEKT PFAEAEAPQY QQNNSTPPQP AMAPQPQQAY NGPVQQVANS QYRPENPTHS 120
  121 RTSSQQSTPS AFRIQGTMSS TYVGGGLRPR TMSQQSGNSR FQPAPTQGLA FPPPLSLRGP 180
  181 DVPRQGGFQP NGPAMISRAP TWEEPSRNPY RAHSTSSSIS ERKPWVDDEK RQVPAPVGPD 240
  241 SDLEKLVEKQ EQPQDGRLLT TPPDAPRPKI PLRHRIKHFT WAWYTWTMGT GALALLIIAQ 300
  301 PFQFPGLRSI GLAVYIFNLI LFSTITLTMI SRFVMFPGTF GKSIRHKKEG FFVATAFVSV 360
  361 STMISGAHRY LIPENDATLN TLIQVMFWGY VTISMIATIT QYSYIFTTHQ YGLQTMMPAW 420
  421 LLPVLPIMLA GTISSVISAT QPSMQATSII VAGLLSQGLG MIISLLIYAH MIGRLMSSTF 480
  481 PDREARPALF ILVGPPSFTA LAFIGIANNI PADFDIRLSP VPILPGQPGV TEKAVIQIMA 540
  541 YVVGTALWGL SLWWFSIALT GVLRAPPRYF HLPWWGMIFP NAGFSLATIT LGKSFGNTQI 600
  601 QILGTVMSSL VALLYLYILY NHIRALLRRE IMYPGKDEDT DD