YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145014143, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPPKFVFY AYAPSLPAAI IFVIAFGLST IWHIKQLCQS RTWYFIPFII GCLFETVGYV  60
   61 GRAISSTESP NFNKNPYIIQ SVLLLLGPTL FAASIYMTLG RIIRLLDAGQ YSLVPARWIT 120
  121 KLFVLGDVLS FFAQGAGGGL LTTAKTENDV AKGQNIILGG LGIQILFFSF FVIATAAFHV 180
  181 RIYRSPTTQS LNTTTLWVPM LYVLYIASLL ILIRSVFRIA EYSQGSRGLL MTHEYFLYLL 240
  241 DALPMFAVCA LFNWMHPSKV IGRCSHVEGG GGAGVKTESR QRLGV

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.81
Transmembrane Helix	12	34	0.88
Cytoplasmic	35	42	0.84
Transmembrane Helix	43	63	0.93
Non-Cytoplasmic	64	76	0.88
Transmembrane Helix	77	100	0.88
Cytoplasmic	101	117	0.87
Transmembrane Helix	118	141	0.83
Non-Cytoplasmic	142	156	0.84
Transmembrane Helix	157	180	0.87
Cytoplasmic	181	194	0.78
Transmembrane Helix	195	217	0.88
Non-Cytoplasmic	218	234	0.87
Transmembrane Helix	235	255	0.93
Cytoplasmic	256	285	0.91