YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11245444
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.64
Transmembrane Helix	52	69	0.55
Non-Cytoplasmic	70	80	0.73
Transmembrane Helix	81	102	0.86
Cytoplasmic	103	125	0.88
Transmembrane Helix	126	147	0.88
Non-Cytoplasmic	148	159	0.82
Transmembrane Helix	160	181	0.96
Cytoplasmic	182	200	0.95
Transmembrane Helix	201	222	0.91
Non-Cytoplasmic	223	242	0.91
Transmembrane Helix	243	263	0.92
Cytoplasmic	264	305	0.99
Transmembrane Helix	306	328	0.85
Non-Cytoplasmic	329	365	0.87
Transmembrane Helix	366	388	0.85
Cytoplasmic	389	435	0.96
Transmembrane Helix	436	458	0.89
Non-Cytoplasmic	459	464	0.77
Transmembrane Helix	465	486	0.94
Cytoplasmic	487	553	0.97
Transmembrane Helix	554	575	0.85
Non-Cytoplasmic	576	585	0.78
Transmembrane Helix	586	603	0.63
Cytoplasmic	604	896	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWSTCVPSR DPRSLAPSGY VSQGTRMSCA PLRVTSPGLR SRSARSLGRR PRIAMVTVGN  60
   61 YCEAEGPVGP AWMQDGLSPC FFFTLVPSTR MALGTLALVL ALPCRRRERP AGADSLSWGA 120
  121 GPRISPYVLQ LLLATLQAAL PLAGLAGRVG TARGAPLPSY LLLASVLESL AGACGLWLLV 180
  181 VERSQARQRL AMGIWIKFRH SPGLLLLWTV AFAAENLALV SWNSPQWWWA RADLGQQVQF 240
  241 SLWVLRYVVS GGLFVLGLWA PGLRPQSYTL QVHEEDQDVE RSQVRSAAQQ STWRDFGRKL 300
  301 RLLSGYLWPR GSPALQLVVL ICLGLMGLER ALNVLVPIFY RNIVNLLTEK APWNSLAWTV 360
  361 TSYVFLKFLQ GGGTGSTGFV SNLRTFLWIR VQQFTSRRVE LLIFSHLHEL SLRWHLGRRT 420
  421 GEVLRIADRG TSSVTGLLSY LVFNVIPTLA DIIIGIIYFS MFFNAWFGLI VFLCMSLYLT 480
  481 LTIVVTEWRT KFRRAMNTQE NATRARAVDS LLNFETVKYY NAESYEVERY REAIIKYQGL 540
  541 EWKSSASLVL LNQTQNLVIG LGLLAGSLLC AYFVTEQKLQ VGDYVLFGTY IIQLYMPLNW 600
  601 FGTYYRMIQT NFIDMENMFD LLKEETEVKD LPGAGPLRFQ KGRIEFENVH FSYADGRETL 660
  661 QDVSFTVMPG QTLALVGPSG AGKSTILRLL FRFYDISSGC IRIDGQDISQ VTQASLRSHI 720
  721 GVVPQDTVLF NDTIADNIRY GRVTAGNDEV EAAAQAAGIH DAIMAFPEGY RTQVGERGLK 780
  781 LSGGEKQRVA IARTILKAPG IILLDEATSA LDTSNERAIQ ASLAKVCANR TTIVVAHRLS 840
  841 TVVNADQILV IKDGCIVERG RHEALLSRGG VYADMWQLQQ GQEETSEDTK PQTMER