YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38107245, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIQIPLDV ITSRFNLSER FSGLNSGSLT SRFSNLRPLS EFFDFKRLSK PQNFGEVQSR  60
   61 VNYNLSYFSS NYSVIFVMLC IYTLLTNWWL LFDIIFVTLG MFLIGKLDGR DLEIGTFKAS 120
  121 PSQLYTGLLV IAIPVGLIAS PFSTIAWLIG ASGFFWGGGL DGRPRAPEFA PHGGRPSRRG 180
  181 RRRYGGAAGE RDDAWAGGGG AGRNRVEELG SDVDDQGALV ADVRGVGFST SSRRFASDQL 240
  241 RFTGIDMGER AGNQSSRRAA NAQNSSEEDE DEDEDEDFDD DRSNGSSMSR RQEEALFESA 300
  301 MTRIRQARAQ GRVDVDLTRA ELEAVNRMTE RKRREAERRR REEQQQQRVS IPISHLDPSS 360
  361 FEDLLEDEPS SRQPSPPQID DRQGYPPVGY FPAPKGRQRS STTSSRATAA RGRIPYDRDV 420
  421 SPDAYSATAA RPMSRREDTS PFRYSYVSQN QPPAAIRHSS DPNRVRGSRV PSPRDPDEML 480
  481 PLSNTSAPSL HAGSNVDPFQ YMAPTSAGPR APPSGAAAAA RRRISVSNPT PAAAGGRSRG 540
  541 GSRRVSPDAT EESSGDDTTS DDYSHGARVA PPTTRRAARE PPVIVEEIRT PTPEPPRRSS 600
  601 RSKASSKSPA KRKPAGSSSN TTSSSSRSKK KR

Type	Start	End	Confidence
Cytoplasmic	1	64	0.86
Transmembrane Helix	65	85	0.79
Non-Cytoplasmic	86	88	0.61
Transmembrane Helix	89	107	0.81
Cytoplasmic	108	124	0.75
Transmembrane Helix	125	150	0.86
Non-Cytoplasmic	151	632	0.82