YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39972361, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLSYWVLP IISGVVWLAT LLGLLLNWTV NEDRVHYGSM SENQTIAYIS DTGAYRLKPL  60
   61 FIAGCVITTI FLDAAFLADR WLRHKGRLVP NSTMGEKILS GLTIAFAVVG TVGLIMLSIF 120
  121 DTASHNRLHN IFLSFFIGGY TISAVFICWE YQRLGRNRDH RVLRISFWIK LVFIIVEVLL 180
  181 CVGFGIANRL REFNVAAVLE WIIAVVFSFY VFSFYVDLYP AVYTKNGKPY TRPLAGGAFR 240
  241 TKGMAEPPMA QRYRGGSASA AEEGRIDSDS TGAGGVGAAA AGGPFGSGAM SHTEREYYQR 300
  301 PPVPQNF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.93
Transmembrane Helix	7	30	0.90
Non-Cytoplasmic	31	58	0.95
Transmembrane Helix	59	78	0.95
Cytoplasmic	79	97	0.93
Transmembrane Helix	98	120	0.94
Non-Cytoplasmic	121	127	0.89
Transmembrane Helix	128	149	0.91
Cytoplasmic	150	166	0.90
Transmembrane Helix	167	187	0.96
Non-Cytoplasmic	188	196	0.81
Transmembrane Helix	197	219	0.87
Cytoplasmic	220	307	0.91