YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145016628, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWEDIEFDA DKVPGIKLAL HIAQIVFAVI AWVLEIIVFR AEGSVINGNV GWTFAVFFLS  60
   61 IPAWIYLIGA PRAPRTRHLA EPHVMIGVDS IYTIIWLSAF STQAAYNTAN LCGTACGQSK 120
  121 AIVGLGFFVC LFFAGSTFFS IYSLKYYQFH GKLPGYDRIG GGGTSQNIDP DKAAFSMAPH 180
  181 GDDAYAPIHG DDHDQHHPLD PGRDDIETGP GAYSSTSYGG AASQQQSYSS GHGRTGSAYG 240
  241 GRTASPYNDD SYGRQPQPVA GQANPFEQGR RENSPFGDHA GYTPPVGGPS PGPGALGPSG 300
  301 QSMYAPPAAA HDPYDDRPAQ FPAAPYDRTM H

Type	Start	End	Confidence
Cytoplasmic	1	17	0.91
Transmembrane Helix	18	39	0.90
Non-Cytoplasmic	40	49	0.75
Transmembrane Helix	50	70	0.92
Cytoplasmic	71	83	0.80
Transmembrane Helix	84	105	0.79
Non-Cytoplasmic	106	120	0.80
Transmembrane Helix	121	142	0.93
Cytoplasmic	143	331	0.89