YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39975761, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHDRRHQV TPPVSFDSEG DATAAGDHGP LTSPAEFYPP PPPPTPESIG ISVPEPLEAM  60
   61 PDSPRTISPL EKWAAHATSS QFNALSGAIG GFTSGVVVCP LDVIKTKLQA QGGFAAVQKG 120
  121 RHVGHHRVYS GLLGTGKIIW REEGIRGMYR GLGPIILGYL PTWAVWFTVY NKSKEFLGEH 180
  181 HKNSFIVNFW SSIVAGASST IVTNPIWVIK TRLMSQSARD HIRTSYSQFP KGANTPTSRP 240
  241 TLHSPWHYKS TMDAARKMYT TEGITSFYSG LTPALLGLTH VAVQFPAYEY LKTKFTGQGM 300
  301 GAVAVDKEGH QAANQWMGVL AATILSKVLA SSATYPHEVI RTRLQTQQKP MVGNGSSNGG 360
  361 AGLPRYQGIA RTFRTILREE GWRAFYAGMG TNLMRAVPAA TVTMLTYEYV MRRLNQAKID 420
  421 GKILLGEAEG

Type	Start	End	Confidence
Cytoplasmic	1	146	0.87
Transmembrane Helix	147	167	0.91
Non-Cytoplasmic	168	185	0.86
Transmembrane Helix	186	209	0.88
Cytoplasmic	210	263	0.92
Transmembrane Helix	264	283	0.54
Non-Cytoplasmic	284	316	0.58
Transmembrane Helix	317	331	0.37
Cytoplasmic	332	430	0.56