YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39975797, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPFALSLWL GLTLVSAVAG VGSDPSTEPT VFNDKTVPPM MELTPENFKE EIKAHKFIIV  60
   61 KNFRLCTSST TRPSPKAVPP TLPSIMTSTL RAVNCIAYFD LCHENGVGSY PTTILYKNGE 120
  121 AAETFKGVKE MDLLSETIEK ALEAAKPGSR PKKISLPEPG AKSAPATDTD SSSSEKATTK 180
  181 ETTKDAKAAD KDVKPASGAE KSTTTAEDKK ADADKTKSST TKTDVAEWWP EFTPPVRKPA 240
  241 KPVDPNPNGL SVSLTAETFQ SLVTMTQEPW LIKFYAPWCS HCRAMASSWQ QLAKDMKGRL 300
  301 NIGEVNCDVE ARLCKDAPLR GYPTILFFKG GERVEYDGLR GLGDLVHYAE KAIDISSGVQ 360
  361 DVDAESFEAL EKKEEVIFVY FYDHATTSED FLALERLPLN LIGKAKLVRT RDRRLYDRFK 420
  421 ITTWPRLLVS REGRPTYYTP LTPDRMRDVN QVLTWMKSVW LPIVPELTAS NAREIMDGRL 480
  481 VVLAILDRQN QDSYASAIRE MKSAANEWTD KMIVAFQQER KELRDAKQLR VEEAEDRGDQ 540
  541 RALRAAKAIR INMDKSDRKE VGFAWVDGVF WQRWIRTTFG VDVKDGERVI INDEDNRRYW 600
  601 DQTITGNYIL PSRTSILETI GQVTRNPNKI KPKLTISSFE KIFFDIRMTF QEHPYLTAGC 660
  661 ILGLALGGAS WFRGRLRRNR GHFRLDDSMG RNEIKAPLLG ANANGKVD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle