YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145011676, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPGYDAVV DIDDEGDLGH TDLQDDLEFH NSTFSETTPG ARKPGAVGGA GSSGLPLPAT  60
   61 ASTVSGKRYL WTVSYYAQFF DVDTSAVLSR CWAALYPRAN FLDVLEGNPD LYGPFWIATT 120
  121 VIFILFIGGT ISQYLATRGT TEAFVYDFTL LSGAAGLIYG YTLFLPVVLF LALRYFGSES 180
  181 ANLLECWALY GYANLIWIPV ALISWSQIDI LNFVFVAVGF GYSVAFLLRN LYPVLSATDR 240
  241 QTSKILLIVV VALHFALAVT IKILFFAHHS PVAKGDGKAQ T

Type	Start	End	Confidence
Cytoplasmic	1	114	0.89
Transmembrane Helix	115	136	0.91
Non-Cytoplasmic	137	152	0.78
Transmembrane Helix	153	176	0.84
Cytoplasmic	177	185	0.72
Transmembrane Helix	186	205	0.87
Non-Cytoplasmic	206	209	0.74
Transmembrane Helix	210	232	0.87
Cytoplasmic	233	244	0.84
Transmembrane Helix	245	266	0.94
Non-Cytoplasmic	267	281	0.90