YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145010387, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATATGLD LAAQEGAQQR RSTATNQSAD DDVTTNADGA AAAPSLKGTT ADTNGTSNGN  60
   61 GNGNGNVDED EQTKALRKAF TRKYRHVAAL HSQARPSTLS HDSEASPSFV GFRNLMVIVL 120
  121 ELLAAQQARN SRGYFNRGRT GSSRDGSTSP TEDESRRFVS TWKLIALVHG INVNSALLIT 180
  181 TYTVYFHIHH PLIGTLTEMH AVIVWLKTAS YAFTNRDLRH AYLHPVKGEL DALPELYKQC 240
  241 PYPNNITMKN LCYFWWAPTL IYQPVYPRSG RIRWVFFFKR VAEVFCLSVC IWFLSAQYAT 300
  301 PVLVNSLDKI ASLDMPAILE RLLKLSTISL AIWLAGFFAL FQSFLNALAE ITRFGDRSFY 360
  361 EAWWNSESLG VYWRTWNKPV YQYFKRHVYS PMLGRGWAPR TASASVFLIS AVLHEILVGV 420
  421 PTHNIIGVAF MGMFLQVPLI ILTAPLEKRK SPTGKLIGNS IFWVSFTIFG QPLAALMYFY 480
  481 AWQAKYGSVS KMGYATSKAA LTN

Type	Start	End	Confidence
Cytoplasmic	1	164	0.89
Transmembrane Helix	165	185	0.81
Non-Cytoplasmic	186	191	0.53
Transmembrane Helix	192	209	0.68
Cytoplasmic	210	275	0.86
Transmembrane Helix	276	296	0.90
Non-Cytoplasmic	297	324	0.88
Transmembrane Helix	325	348	0.84
Cytoplasmic	349	395	0.96
Transmembrane Helix	396	418	0.88
Non-Cytoplasmic	419	424	0.80
Transmembrane Helix	425	446	0.91
Cytoplasmic	447	459	0.86
Transmembrane Helix	460	482	0.88
Non-Cytoplasmic	483	503	0.97