YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39939832, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTFGKATI AAIGVFTGAA ATFSFISGDK STTPVLADIS SKPGESHKLP TPGNTGGHPV  60
   61 PSTPVDPAGL FKYGFPGPVA DLAARQAFIS TYDRRLRNPL WVAEHITPES LAKRDGDRKN 120
  121 SAFLEDPSIP EKFRAKLKDY FRSGFDRGHQ VPAADCKWSQ TAMDETFFLS NMCPQVGEGF 180
  181 NRDYWAHFED FSRRLTTRYP SVRIVTGPLY LPKRDPADGK WYVKYEVIGN PANVAVPTHF 240
  241 YKVIFAEDGR EGGNVALGAF VLPNAKIPND KPLTDFEVPL EAVERASGLE FAEKLPAARR 300
  301 RRLCADANCA LIIKDYADRQ KAFTKEAPPQ KTL

Type	Start	End	Confidence
Signal Peptide	1	21	0.93
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	333	0.99