YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39939896, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEVNAAAVV SQVRSRLPSY LRIGLTRELA VLLTKRPART PVGAMSLKIE RDTFETGTST  60
   61 AAKVAEQVSS KLSEARDAPL PGTSGKHPVS AAVGTVLTGG KAMAGTKGYL AAYIKQLEDN 120
  121 PLRTKMLTAG TLSGAQELIA SFLAKDRNKH GNYFTSRVPK MAAYGALVSA PMGHFLIWLL 180
  181 QKAFKNRTSL RAKIMQIIVS NLIIAPIQNS VYLTAMALIA GARTYHQVRA TVRVGFWRVM 240
  241 KVSWVTSPIC LAFAQKFLPE ETWVPFFNLV SFIIGTYVNT ITKKKRLAAL RKKHFGDGGP 300
  301 GGRPSSLGGR PEDYPPMGPN PPY

Type	Start	End	Confidence
Cytoplasmic	1	160	0.59
Transmembrane Helix	161	180	0.87
Non-Cytoplasmic	181	196	0.47
Transmembrane Helix	197	222	0.73
Cytoplasmic	223	236	0.48
Transmembrane Helix	237	255	0.56
Non-Cytoplasmic	256	262	0.81
Transmembrane Helix	263	282	0.92
Cytoplasmic	283	323	0.97