YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39939974, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.92
Transmembrane Helix	28	47	0.90
Non-Cytoplasmic	48	57	0.79
Transmembrane Helix	58	77	0.88
Cytoplasmic	78	101	0.88
Transmembrane Helix	102	123	0.91
Non-Cytoplasmic	124	152	0.93
Transmembrane Helix	153	178	0.91
Cytoplasmic	179	198	0.90
Transmembrane Helix	199	219	0.96
Non-Cytoplasmic	220	226	0.80
Transmembrane Helix	227	246	0.94
Cytoplasmic	247	258	0.79
Transmembrane Helix	259	280	0.87
Non-Cytoplasmic	281	294	0.77
Transmembrane Helix	295	316	0.83
Cytoplasmic	317	324	0.83
Transmembrane Helix	325	346	0.94
Non-Cytoplasmic	347	361	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSPQPPSR QGDKRPAVFS ARTSTELYTI SYLILFSLLG TLARLGLQAL TTYPGSPVLF  60
   61 PSVWPNLGGS FVIGFLAEDR SLFRARRQEQ EEQDHQKYKK TIPLYIGLAT GFCGSFTSFS 120
  121 SFIRDVVLTL TNDLGPDPAI SGPAPRNGGF SFMAFLAVII VTVSLSLCAL VAGAHFALAL 180
  181 QPLLPSVMGS ERLRKAMDLS VIILGWGCWI AACLVAGFAP SEVWRGQVLF ALVFAPLGCL 240
  241 ARFYLSLALN GKLTPSFPVG TFTVNVVGTV VLAVCWDIAH AGAGGIIGCQ VLQGLEDGFC 300
  301 GCLTTVSTWV AELVGLAAKR RRDAYIYGAT SVVAALAVGI AIMGGFRWSH DSLPELLCVI 360
  361 H