YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39940102, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSEPFPLL STSADQLHNA ADRVSASAVR RRRQSSGLGS ELRVGDTGAP GLATSIANMG  60
   61 QNKDATKRAP RRRKAYFRRF KQFATKHTCV LPLVLLFIFL VLYAINPTES NPISRFIFLS 120
  121 YELPPDAPGK PPQYGKGRWD IAFVTFYTVV LSFTREFIMQ ELLRPLSRYA GVKSRGKQAR 180
  181 FMEQAYTAIY FAILGPAGMY VMSRTPVWYF NTHGMYENFP HKTHEACFKF YYLFQAAYWA 240
  241 QQAIVLVLGM EKPRKDFKEL IAHHIVSLAL IALSYRFHFT YIGLAVYVTH DISDFFLATA 300
  301 KLMNYIDHAL TGPYFAFFMG VWIYLRHFIN LRIIWSLLTE FQTVGPFELN WETQQYKCRL 360
  361 SQVITLGLLS SLQALNLFWL FFIVRIAYRF VFNDNLRDDR SDVETEAEDS TEPAATTATA 420
  421 NGASVANGSA IKKRK

Type	Start	End	Confidence
Cytoplasmic	1	82	0.98
Transmembrane Helix	83	105	0.91
Non-Cytoplasmic	106	140	0.93
Transmembrane Helix	141	159	0.93
Cytoplasmic	160	184	0.90
Transmembrane Helix	185	203	0.91
Non-Cytoplasmic	204	229	0.85
Transmembrane Helix	230	250	0.87
Cytoplasmic	251	259	0.93
Transmembrane Helix	260	279	0.89
Non-Cytoplasmic	280	304	0.85
Transmembrane Helix	305	325	0.87
Cytoplasmic	326	362	0.84
Transmembrane Helix	363	383	0.83
Non-Cytoplasmic	384	435	0.76