YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39940356, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWELSRRRI IRTVNSKYIF DRVPLLHFLI FLVEMAFVAR LTSRFNAYYE ERPILTMMVT  60
   61 NAVLGGIADT VAQTITAVKQ RAARKGPFHP NPKDDPIAIE IQELDRKNPL SDRDLIPDSR 120
  121 ILPPPFDFER LTRFMAYGFC MAPVQFKWFK FLEKTFPITK TAAFGPAMKR VAMDQLVFAP 180
  181 FGIAAFFTVM TIAEGGGRRA VQNKLRDMYV PTLKANFAIW PAVQVINFRL MPVQFQLPFV 240
  241 STIGIAWTAY LSLSNAAEEA QPTPHAYPDS PNLRLS

Type	Start	End	Confidence
Cytoplasmic	1	17	0.97
Transmembrane Helix	18	39	0.90
Non-Cytoplasmic	40	53	0.87
Transmembrane Helix	54	77	0.75
Cytoplasmic	78	175	0.73
Transmembrane Helix	176	195	0.86
Non-Cytoplasmic	196	234	0.51
Transmembrane Helix	235	251	0.63
Cytoplasmic	252	276	0.58