YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38105917, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRRTYLFLV LVRLYFALSP SYLHPDENFQ GPEVIAGKSH SCQIFSYPVR HTWEFTSERP  60
   61 IRSVFPLWPV YGLPMLLLRW LWIGNGHDGE IPPIAVFWAL RVLMFVLSFV LEDWAIHELI 120
  121 PSPRQRRTAV MLVASSYVTW TYQTHTFSNA IETLAVAWSL VLIERIVASP PQRDSLMASV 180
  181 VLGIICVFVV VDTAFYTRTV SWTDIVSNPV ITPLNNLLYN ISTENLAQHG LHPWYQHMLA 240
  241 NLPLLIGPGA LLLVLNARST QRLYSALSGI FVLSIFQHQE ARFLLPTVPL ILSSVRLPKN 300
  301 PTMRQLWVTS WIIFNVALGV LMGVYHQGGI IPGQVFLSKQ PDVTQAIWWK TYTPPIWLLN 360
  361 GKNEVLETRD VMGMKGEDVY AQLEQLATCD TPADRRSLEY LKEKNGTYLI APLSTTWLDQ 420
  421 YLPNKGLEGL RFREVWRHRQ HFNLDDLDWA EDGVWGTLSR LIGRRGLAAW RITKSCPGQK 480
  481 GA

Type	Start	End	Confidence
Cytoplasmic	1	63	0.60
Transmembrane Helix	64	83	0.92
Non-Cytoplasmic	84	93	0.54
Transmembrane Helix	94	116	0.85
Cytoplasmic	117	127	0.53
Transmembrane Helix	128	144	0.44
Non-Cytoplasmic	145	149	0.42
Transmembrane Helix	150	168	0.71
Cytoplasmic	169	175	0.88
Transmembrane Helix	176	196	0.94
Non-Cytoplasmic	197	236	0.92
Transmembrane Helix	237	256	0.93
Cytoplasmic	257	305	0.75
Transmembrane Helix	306	329	0.87
Non-Cytoplasmic	330	482	0.77