YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39940542, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLYRIGIPR TLGRLSSPAF VCRQCLHTQP LKASQVARQV IRSPALSRNQ TSTSTSTGNN  60
   61 ARTKWLVGGS RTFFRSGTKS SSGSTATAVE AATAEASSEA GAGARSSSFP ETNSKAVGYW 120
  121 LIGSAVSVFG IVIFGGLTRL TESGLSITEW RPVTGSLPPR NAEDWESEFS KYRASPEFAL 180
  181 LNPHMTLDEF KKIYYMEWTH RLWGRFIGLT FVLPTVYFIA RKQVTRKMAF NLVGISALIG 240
  241 FQGFIGWWMV KSGLKDDLFA PGSHPRVSQY RLTTHLGTAF LCYSAMLLSG LSVLRTRRLV 300
  301 ADPTAATKLF SQLKNAAITP FRRYVLAMTA LVFTTAMSGA LVAGLDAGLI YNEFPKMGVG 360
  361 LTPPMTELFD KFYSRKEDGS DLWWRNMLEN PSLVQLDHRA LAMTTFCAVV AMFVWSRRLG 420
  421 AVLPTSARKG SMGVLHLALI QVALGITTLI YMVPTHLAAT HQAGALALLT GSLVLSHRLH 480
  481 VSKSTVSLIQ RQLLKSAGSG GAARLPTKRI

Type	Start	End	Confidence
Cytoplasmic	1	115	0.97
Transmembrane Helix	116	138	0.92
Non-Cytoplasmic	139	201	0.95
Transmembrane Helix	202	220	0.93
Cytoplasmic	221	228	0.89
Transmembrane Helix	229	250	0.93
Non-Cytoplasmic	251	271	0.95
Transmembrane Helix	272	294	0.88
Cytoplasmic	295	323	0.96
Transmembrane Helix	324	345	0.90
Non-Cytoplasmic	346	397	0.93
Transmembrane Helix	398	416	0.93
Cytoplasmic	417	431	0.85
Transmembrane Helix	432	453	0.91
Non-Cytoplasmic	454	458	0.79
Transmembrane Helix	459	481	0.86
Cytoplasmic	482	510	0.97